Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3305171_3306531_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3305171 - 3306531

Intron Length:

1361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTATA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTGAT

U12 Branch Point Sequence:

TCTCTAGTGATC

Flanking Amino Acid:

GIVANTLSVKIISGQFLSDK

Intron Amino Acid Position:

561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

87.3

29.4

Major BPS

73.5

0.58

1.2

63.4

44.3

Major PPT

0.59

73.5

41.9

Minor 5ss

38.2

-1.3

45.5

Minor BPS

42.7

-0.5

2.1

55.21

37.5

Associated Gene:

Gene:

PLCB1

Ensembl Gene ID:

ENSAPLG00000012885

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013477

3217190 - 3379623

162434