About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33052528_33054818_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33052528 - 33054818
Intron Length:
2291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
AAGTACTAAGCA
Flanking Amino Acid:
DMDLNYRGMLIPGENIATMK
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
79
35.3
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
82
0.72
0.7
81.3
30.7
Minor 5ss
45.7
-0.5
2.8
61.4
37.1
Minor BPS
45.8
-0.3
2
56.11
42.6

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365