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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33055039_33058592_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33055039 - 33058592
Intron Length:
3554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TGACAATCGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTCCTGACA
Flanking Amino Acid:
IRILLWDRDSRSYSYYIEVS
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
48.3
-0
1.2
45.4
40.4
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
61.7
0.36
1.7
76.64
33.5

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365