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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33122427_33131727_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33122427 - 33131727
Intron Length:
9301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTACTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTTCTTTACTT
Flanking Amino Acid:
LAQPYMIGSIRLLLWDCDDR
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
61.1
43.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
80.6
0.69
0.8
81.5
29.3
Minor 5ss
30.3
-2.3
3.3
39.2
46
Minor BPS
71.4
0.75
1.5
85.82
34.8

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365