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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33131836_33151045_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33131836 - 33151045
Intron Length:
19210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GAATTTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTTCTGGAATT
Flanking Amino Acid:
MVADRTKISCKSWQTITFDK
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.2
0.57
0.9
70
40.9
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
52.1
0.14
2.1
76.06
41.4

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365