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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3313240_3319937_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3313240 - 3319937
Intron Length:
6698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACCAAAACTTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
TGGAACTTAACA
Flanking Amino Acid:
SMFEPSSPGAAFPSLCLQLM
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
59.1
0.21
1
52.4
40.8
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
64.1
0.44
1.6
70.37
41.2

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434