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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33151125_33155573_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33151125 - 33155573
Intron Length:
4449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGCTTTATCT
Flanking Amino Acid:
IVGTHNTANEVFHCVHFECP
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.4
0.8
0.8
77.8
36.7
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
69.7
0.7
1.7
87.39
38.7

Associated Gene:

Gene:
BTBD9
Ensembl Gene ID:
ENSAPLG00000002877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002942
33048829 - 33156193
107365