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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3320678_3327442_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3320678 - 3327442
Intron Length:
6765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTCCACCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
ILLSFENHVDSPKQQAKMAE
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
79.7
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.6
0.53
0.8
70.5
30.2
Minor 5ss
38.9
-1.2
2.8
52
39.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434