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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33224842_33238615_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33224842 - 33238615
Intron Length:
13774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCTTTCCCC
Flanking Amino Acid:
VQQELGSCRCGYVFCMLHRL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
69.7
0.44
1
66.7
34.1
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
46.5
-0.2
3.6
77.59
39

Associated Gene:

Gene:
ZFAND3
Ensembl Gene ID:
ENSAPLG00000006211
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006434
33223687 - 33350959
127273