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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3327526_3331203_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3327526 - 3331203
Intron Length:
3678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
TTTGGTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AAATTTCTAACT
Flanking Amino Acid:
FTMTTEISFKEVIEAIAECA
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.9
0.67
0.8
77.9
36.6
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
57.9
0.33
1.6
72.95
37.5

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434