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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33319779_33321823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33319779 - 33321823
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTCTTGACC
Flanking Amino Acid:
TMNLCSKCFAEKRNPHNEKD
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
77.1
0.84
1.1
83.09
29.6

Associated Gene:

Gene:
ZFAND3
Ensembl Gene ID:
ENSAPLG00000006211
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006434
33223687 - 33350959
127273