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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33384717_33385513_F

Intron Information:

Intron Rank:
149142
Intron Class:
major
Intron Phase:
Intron Coordinates:
33384717 - 33385513
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAG
U12 Branch Point Sequence:
TCAGCTCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.7
37.6
Major BPS
48.2
-0.1
1.6
57.3
41.7
Major PPT
80.5
0.69
0.7
72.5
32.2
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
44.8
-0.3
1.9
60.51
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030199
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045310
33384462 - 33396784
12323