About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33402059_33418111_F

Intron Information:

Intron Rank:
150271
Intron Class:
major
Intron Phase:
Intron Coordinates:
33402059 - 33418111
Intron Length:
16053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018895
33401253 - 33418290
17038