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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33471994_33481887_F

Intron Information:

Intron Rank:
139790
Intron Class:
major
Intron Phase:
Intron Coordinates:
33471994 - 33481887
Intron Length:
9894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
TCCTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GCCTCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.3
0.73
0.7
81
29.8
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
62.5
0.47
1.6
72.14
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025158
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035099
33471673 - 33486130
14458