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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33506461_33543967_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33506461 - 33543967
Intron Length:
37507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CCCTCTTTACCT
Flanking Amino Acid:
MQAPAQAQIIHA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
74
0.6
1
65.6
41.1
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
59.8
0.39
1.7
70.57
47

Associated Gene:

Gene:
MDGA1
Ensembl Gene ID:
ENSAPLG00000006008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006289
33506454 - 33630119
123666