Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33544108_33546139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33544108 - 33546139

Intron Length:

2032

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TTACCCTCATTC

Flanking Amino Acid:

CLVTGHPRPQVRWTKTAGSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.8

87.9

29.3

Major BPS

0.5

1.1

71.2

35.2

Major PPT

83.9

0.76

0.8

80.1

31.8

Minor 5ss

49.8

-0

2.8

73.2

43.7

Minor BPS

51.6

0.03

1.8

65.35

40.1

Associated Gene:

Gene:

MDGA1

Ensembl Gene ID:

ENSAPLG00000006008

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047551

33497808 - 33630119

132312

ENSAPLT00000006289

33506454 - 33630119

123666