Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33550451_33553289_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33550451 - 33553289

Intron Length:

2839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAAAAAA

5'SS Class:

major

3'SS Sequence:

TCCCAATTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCAAT

U12 Branch Point Sequence:

TTCCTCCCAATT

Flanking Amino Acid:

VDIYEPLYTQGETKVLKLKN

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

0.9

75.4

28.5

Major BPS

59.3

0.23

1.3

66.9

37.7

Major PPT

70.5

0.46

0.9

61.1

38.8

Minor 5ss

26.7

-2.7

2.8

30.6

42.8

Minor BPS

48.6

-0

1.9

41.2

Associated Gene:

Gene:

MDGA1

Ensembl Gene ID:

ENSAPLG00000006008

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047551

33497808 - 33630119

132312

ENSAPLT00000006289

33506454 - 33630119

123666