Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3360170_3361572_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3360170 - 3361572

Intron Length:

1403

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGAAAA

5'SS Class:

major

3'SS Sequence:

AATTTTTCCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGCTTTAATT

Flanking Amino Acid:

RPEIDHIFSEFGAKSKPYLT

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

71.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.2

0.54

0.8

66.9

39.6

Minor 5ss

35.4

-1.7

46.4

Minor BPS

80.1

1.02

1.2

91.31

32.6

Associated Gene:

Gene:

PLCB1

Ensembl Gene ID:

ENSAPLG00000012885

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013477

3217190 - 3379623

162434