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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3361674_3368110_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3361674 - 3368110
Intron Length:
6437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
LEACNLPSSRNDSIPQDDFT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.8
79.7
32
Minor 5ss
43.5
-0.7
2.9
52.9
44.1
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434