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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33669645_33670263_R

Intron Information:

Intron Rank:
148566
Intron Class:
major
Intron Phase:
Intron Coordinates:
33669645 - 33670263
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCTGTCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.3
0.66
0.8
76.8
30.6
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
46.8
-0.1
2
66.82
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042453
33668258 - 33670457
2200