About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3368846_3372798_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3368846 - 3372798
Intron Length:
3953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
NMSRDAFLEKAYTKLKLQVT
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.4
62
44
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
34
-1.8
3.2
39
39.8
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434