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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33717696_33719758_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33717696 - 33719758
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CTTCTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACAG
Flanking Amino Acid:
LRREKLSPEGRKSLERERNL
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.1
0.74
0.8
76.8
30.4
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
49.5
-0.1
2.1
61.72
45.7

Associated Gene:

Gene:
CCDC167
Ensembl Gene ID:
ENSAPLG00000014260
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014850
33716901 - 33721198
4298