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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33725051_33726804_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33725051 - 33726804
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTGCCATACTA
Flanking Amino Acid:
DLPSESIAPFHVCHYSRLFW
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.6
0.62
0.8
71.8
32.8
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
48.7
-0.1
2
63.54
43.4

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379