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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33727556_33728095_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33727556 - 33728095
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TTCTCTCTACGT
Flanking Amino Acid:
RLEEMEKIFVRLEMKVIKSS
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
72
0.5
0.9
70.3
35.3
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
47.5
-0.1
2.2
71.75
45.6

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379