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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3372879_3379527_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3372879 - 3379527
Intron Length:
6649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAC
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATCAAAT
Flanking Amino Acid:
LVAFQEDIAKEWSDEVFSLA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.9
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.4
0.73
0.8
77.3
31.5
Minor 5ss
32.3
-2
3.1
42.2
44.6
Minor BPS
48.9
-0
2
75.07
40.5

Associated Gene:

Gene:
PLCB1
Ensembl Gene ID:
ENSAPLG00000012885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013477
3217190 - 3379623
162434