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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33731854_33732060_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33731854 - 33732060
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CATTACTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTTCTATACAT
Flanking Amino Acid:
PKSKFFELIQGTDIDTFSYK
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
73.8
0.54
0.8
70.6
35.5
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
55.8
0.26
2
82.07
39.2

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379