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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33732130_33732772_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33732130 - 33732772
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GATTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATCAATT
Flanking Amino Acid:
IRKECLQLWGIPDQARVAPS
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.5
0.71
0.8
78.2
36
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
57.6
0.32
1.8
78.15
38

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379