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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33734240_33734809_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33734240 - 33734809
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ACAACCCAAATG
Flanking Amino Acid:
PVTSRPANSERYVICKGLKL
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
81.1
26.4
Major BPS
68
0.45
1
57.8
39
Major PPT
79.1
0.65
0.8
72.8
32
Minor 5ss
37.1
-1.5
3.2
49.9
46.6
Minor BPS
42.9
-0.6
2
44
41.8

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379