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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33738566_33738771_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33738566 - 33738771
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAC
U12 Branch Point Sequence:
ATTTCCTCAGTT
Flanking Amino Acid:
MFTNPKDFHGRPLIKERDAE
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
59.1
0.23
1.2
52.7
42.9
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
64
0.52
1.8
83
38.2

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379