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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33738845_33738948_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33738845 - 33738948
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGCAGA
5'SS Class:
major
3'SS Sequence:
TATGTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGAAACTTAATA
Flanking Amino Acid:
EMIRGVFFLNRAAMKMANMD
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
61.5
44.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.56
1
68.4
41.9
Minor 5ss
40.3
-1.1
2.6
49.5
46.3
Minor BPS
61
0.34
1.5
67.34
38.4

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379