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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33739735_33740458_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33739735 - 33740458
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
CATCCTCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTGCTAACT
Flanking Amino Acid:
ELKEWMTVGKRKMVIEDETE
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.7
0.58
0.8
66
35.5
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
54.3
0.21
2.3
81.54
39.8

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379