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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33742040_33743930_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33742040 - 33743930
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCTAC
U12 Branch Point Sequence:
TTTTCTTTATAG
Flanking Amino Acid:
MYNSVSQKLMAKMGFREGEG
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
48.9
-0
1.2
48.2
36.3
Major PPT
85.5
0.8
0.7
80.6
31.5
Minor 5ss
32.3
-2
3.1
37
42.7
Minor BPS
64
0.3
1.8
72.46
40.4

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379