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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33744062_33747587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33744062 - 33747587
Intron Length:
3526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGAC
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGGTATTAATT
Flanking Amino Acid:
EAQLSNHTTQESSSSSSGSE
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62.8
38.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
29.8
-2.3
3.5
39.6
46.7
Minor BPS
59.5
0.38
1.7
76.18
41.1

Associated Gene:

Gene:
CMTR1
Ensembl Gene ID:
ENSAPLG00000014262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014915
33723918 - 33748296
24379