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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33753861_33755753_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33753861 - 33755753
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTGTATCT
Flanking Amino Acid:
HRLSLIRERKEKWKMLVNPA
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.3
0.52
1
67.2
42.9
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
50.2
0.09
2.2
77.22
39.9

Associated Gene:

Gene:
RNF8
Ensembl Gene ID:
ENSAPLG00000014798
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015413
33753715 - 33765875
12161