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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33756997_33757839_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33756997 - 33757839
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
TTGTTAGTAAGT
Flanking Amino Acid:
AKNKELEETKEEKEKVRAQK
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
57.6
0.19
1
53
33.7
Major PPT
76.9
0.61
1
73.2
37.3
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
46.3
-0.2
2.4
72.1
45

Associated Gene:

Gene:
RNF8
Ensembl Gene ID:
ENSAPLG00000014798
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015413
33753715 - 33765875
12161