Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33760247_33761429_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33760247 - 33761429

Intron Length:

1183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGATGG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAAAAAT

U12 Branch Point Sequence:

TTTCCAGCAAAA

Flanking Amino Acid:

TFSKEQQNLEGVKWQQGEEN

Intron Amino Acid Position:

410

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

65.1

41.6

Major BPS

50.5

0.01

1.1

57.3

34.4

Major PPT

88.9

0.88

0.7

88.2

29.1

Minor 5ss

43.4

-0.7

2.8

56.2

Minor BPS

43.3

-0.5

2.4

64.17

41.4

Associated Gene:

Gene:

RNF8

Ensembl Gene ID:

ENSAPLG00000014798

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015413

33753715 - 33765875

12161