Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33762171_33763769_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33762171 - 33763769

Intron Length:

1599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGAGG

5'SS Class:

major

3'SS Sequence:

TGTTCATTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TCTTTGTTCATT

Flanking Amino Acid:

EGQWTVKDNKSLNGVWLNKQ

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

57.8

46.6

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

83.6

0.76

0.8

77.6

35.6

Minor 5ss

29.9

-2.3

3.3

39.8

45.8

Minor BPS

48.9

-0

2.4

74.4

43.5

Associated Gene:

Gene:

RNF8

Ensembl Gene ID:

ENSAPLG00000014798

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015413

33753715 - 33765875

12161