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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33765865_33765973_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33765865 - 33765973
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCCCC
5'SS Class:
major
3'SS Sequence:
CGTTATCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCCCCGTTATCT
Flanking Amino Acid:
LLFVNAGMNQFKPIFLGTAH
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.9
42.5
Major BPS
65
0.37
1.3
76.1
38
Major PPT
75.5
0.57
0.9
69.1
36.6
Minor 5ss
32.6
-2
3.2
42.7
44.4
Minor BPS
48.2
-0
2.3
68.82
47.8

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035169
33765595 - 33777960
12366
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012