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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33766163_33766843_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33766163 - 33766843
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGAAT
U12 Branch Point Sequence:
TGTCCCTTATCT
Flanking Amino Acid:
GNWSFGDYFKEEACSMAWEL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
62.3
0.31
1.4
73.3
39.1
Major PPT
74.4
0.55
0.9
72.8
37.3
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
72.1
0.77
1.6
86.73
38.6

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035169
33765595 - 33777960
12366
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012