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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33766990_33767599_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33766990 - 33767599
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
TGCCCCAGCACT
Flanking Amino Acid:
EECRDVWLQLGVPASRVLPF
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
81.8
0.72
0.8
72.9
37.4
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
44.4
-0.3
2.1
64.42
45.1

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012
ENSAPLT00000035169
33765595 - 33777960
12366