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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33768304_33768708_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33768304 - 33768708
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACAGTG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCGTGCTGATCT
Flanking Amino Acid:
FTPILDAIHKGCGAPRYQGL
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
65.9
40.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
34.1
-1.8
3.5
46.6
48.7
Minor BPS
45
-0.3
2.1
60.02
49.2

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012
ENSAPLT00000035169
33765595 - 33777960
12366