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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33771488_33772179_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33771488 - 33772179
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCCCTTCTAACC
Flanking Amino Acid:
FNELVQEDAKRKAEGVQAGQ
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.5
0.66
0.8
73.5
31.5
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
49.7
-0
1.7
59.44
40.1

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035169
33765595 - 33777960
12366
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012