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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33772331_33774082_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33772331 - 33774082
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTCGCACTGATT
Flanking Amino Acid:
SYKLGQHGQYEFSPCQATVL
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1
70.9
39.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
75.6
0.58
0.9
72.5
32.2
Minor 5ss
33.5
-1.9
3.2
44.4
43.5
Minor BPS
44
-0.3
2
60.43
43.7

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012
ENSAPLT00000035169
33765595 - 33777960
12366