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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33774253_33775107_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33774253 - 33775107
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGTGCCCTAACT
Flanking Amino Acid:
QGYLIRLGQQDILFPVESVH
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.7
0.71
0.9
80.3
31.7
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
67.9
0.64
1.8
85.76
40.1

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035169
33765595 - 33777960
12366
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012