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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33775222_33775624_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33775222 - 33775624
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAGAA
U12 Branch Point Sequence:
ACCAGGGGAATT
Flanking Amino Acid:
GDQVQLFVDEARRLGCMTNH
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
49.9
-0
1.1
46.7
38.9
Major PPT
80.6
0.69
0.9
76.9
37.3
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
30.6
-1.4
2.5
42.89
41.3

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022455
33765595 - 33789144
23550
ENSAPLT00000015515
33765595 - 33781606
16012
ENSAPLT00000035169
33765595 - 33777960
12366