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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33776172_33777888_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33776172 - 33777888
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAG
5'SS Class:
strong_major
3'SS Sequence:
ATCAACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCCATCAACT
Flanking Amino Acid:
RVQGLRAMDEAPSPNRSYGG
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
64.3
41.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
73.5
0.53
0.9
65.9
39.9
Minor 5ss
37.4
-1.4
3
46.9
48.4
Minor BPS
59.4
0.37
1.9
79.4
42.1

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035169
33765595 - 33777960
12366