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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33777998_33778206_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33777998 - 33778206
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GTCTCCATGACC
Flanking Amino Acid:
IAVTGRQAKQNPLFQIGTWH
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
63.4
0.4
1.7
71.88
39.3

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015515
33765595 - 33781606
16012