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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33778279_33779473_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33778279 - 33779473
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
CGCACCTGAAGT
Flanking Amino Acid:
SLWNRNFSLQAREVGQCLAV
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
81.8
0.71
0.7
76.4
25.7
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
48.5
-0
1.9
62.21
47.1

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015515
33765595 - 33781606
16012