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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33781159_33781441_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33781159 - 33781441
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAA
U12 Branch Point Sequence:
GCATCCCAAGCC
Flanking Amino Acid:
EVLCACQVSKDCIPVFSAAD
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
54.3
0.11
1.2
64.5
33.7
Major PPT
77
0.61
0.8
69
37.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
43.3
-0.5
2.1
52.79
44.2

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015515
33765595 - 33781606
16012