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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_33781159_33788884_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33781159 - 33788884
Intron Length:
7726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TCTTTCCAAGGT
Flanking Amino Acid:
EVLCACQVSKAAQLENVVLL
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
41.6
-0.5
2.3
63.51
46.9

Associated Gene:

Gene:
AARS2
Ensembl Gene ID:
ENSAPLG00000014835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022455
33765595 - 33789144
23550